sequence extraction from PDB file
By danag at Thu, Feb 9 2006 9:47am |
Description:
the script extracts a sequence from PDB file and saves it in fasta format.
Sequences of different chains are saved as different fasta sequences.
Title of the sequences is >pdb_file:chain, fore example >1JTG:A
The program recognizes DNA or RNA sequence and gives an error
The program recognize short sequences ( up to 60 aa) and gives an error
An output is saved in a file with the same name as an input file + "fasta" suffix
Author's Email:
dana.reichmann@weizmann.ac.il
Author's Full Name:
Dana Reichmann
Author's Homepage:
http://bioinfo.weizmann.ac.il
Script File:
pdb_fasta.pl.zip (1.39 KB)
